The basic Pathway Commons table that comprises the foundation of the network This is all SIF Pathway commons interactions loaded into a network. The CHEMI interactions are present. The igraph network object consisting of 30,910 genes and 1,902,605 interactions.
basic_network_table
A list object
total Pathway Commons Database in an dataframe
Origin Vertex
Target Vertex
Type of interaction
how many Pathway Commons databases record an interaction between to and from vertex
The Unique Code of the entire interaction
The Pathway(s) in Pathway commons this interaction is documented in as a list object
How many interaction types are there between to and from vertacies
The to:from name desigantion of the edge
how many times is to vertex connected to from vertex across all pathway commons data bases and interaction types
A list of igraph network objects by interaction type, all edge and vertex attributes are the same as basic_network$network